molecupy.exceptions (Exceptions)

molecuPy custom exceptions.

exception molecupy.exceptions.LongBondWarning

The warning issued if a covalent bond is made between two atoms that is unrealistically long.

exception molecupy.exceptions.NoAtomsError

The exception raised if an atomic structure is created without passing any atoms.

exception molecupy.exceptions.NoResiduesError

The exception raised if a residuic structure is created without passing any residues.

exception molecupy.exceptions.MultipleResidueConnectionError

The exception raised when a residue connection is made to a residue which is already connected to a residue in that fashion.

exception molecupy.exceptions.BrokenHelixError

The exception raised when an alpha helix is created with residues on different chains.

exception molecupy.exceptions.BrokenStrandError

The exception raised when a beta strand is created with residues on different chains.

exception molecupy.exceptions.DuplicateAtomsError

The exception raised if an atomic structure is created with two atoms of the same atom_id.

exception molecupy.exceptions.DuplicateSmallMoleculesError

The exception raised if a Model is given a small molecule when there is already a small molecule with that molecule_id.

exception molecupy.exceptions.DuplicateResiduesError

The exception raised if a residuic structure is created with two residues of the same residue_id.

exception molecupy.exceptions.DuplicateChainsError

The exception raised if a Model is given a chain when there is already a chain with that chain_id.

exception molecupy.exceptions.DuplicateBindSitesError

The exception raised if a Model is given a bindsite when there is already a site with that site_id.

exception molecupy.exceptions.DuplicateComplexesError

The exception raised if a Model is given a Complex when there is already a Complex with that complex_id.

exception molecupy.exceptions.InvalidPdbCodeError

The exception raised when a PDB file is requested that does not seem to exist.